PINNACLE

Li MM, Huang Y, Sumathipala M, Liang MQ, Valdeolivas A, Ananthakrishnan A, Liao K, Marbach D, Zitnik M. Contextual AI models for single-cell protein biology. GitHub. 2024. Available at: https://github.com/mims-harvard/PINNACLE

Knowledge Graph Based Agent for Complex, Knowledge-Intensive QA in Medicine

Su X, Wang Y, Gao S, Liu X, Guinchiglia V, Clevert DA, Zitnik M. Knowledge Graph Based Agent for Complex, Knowledge-Intensive QA in Medicine. arXiv. 2024. doi: doi.org/10.48550/arXiv.2410.04660

A foundation model for clinician-centered drug repurposing

Huang K, Chandak P, Wang Q, Havaldar S, Vaid A, Leskovec J, Nadkarni G, Glicksberg BS, Gehlenborg N, Zitnik M. A foundation model for clinician-centered drug repurposing. 2024. Nature Medicine. doi: 10.1038/s41591-024-03233-x

Contextual AI models for single-cell protein biology

Lin MM, Huang Y, Sumathipala M, Liang MQ, Valdeolivas A, Ananthakrishnan AN, Liao K, Marbach D, Zitnik M. Contextual AI models for single-cell protein biology. Nature Methods. 2024. doi:10.1038/s41592-024-02341-3